Welcome to Papaver species Genomic Data Page

This is the Genomics Data resource of Papaver species genome

Currently, it includes Papaver somniferum, Papaver rhoeas , Papaver bracteatum and Papaver setigerum genomic data

Papaver somniferum

Genomic Raw Data: at National Genomics Data Center (NGDC)

Genome Assembly: GWHAZPJ00000000.1

Genome Annotation: bed (2024, HiFi)     gff3 (2024, HiFi)     cds (2024, HiFi)     protein (2024, HiFi)

The 2021 version (published on Nature Communications) of Papaver somniferum genomes assembly can be downloaed from NGDC under accession number GWHAZPJ00000000 (2021) , the genome annotation can be downloaed from bed (2021)     gff3 (2021)     cds (2021)     protein (2021)

The 2018 version of Papaver somniferum (Opium poppy) genomes assembly can be downloaed from NCBI under accession number PRJNA435796 , the genome annotation can be downloaed from Google drive , and the raw sequencing data can be downloaed from NCBI under accession number PUWZ00000000

Papaver setigerum

Genomic Raw Data: at National Genomics Data Center (NGDC)

Genome Assembly: GWHAZPH00000000.1

Genome Annotation: bed (2024, HiFi)     gff3 (2024, HiFi)     cds (2024, HiFi)     protein (2024, HiFi)

The 2021 version (published on Nature Communications ) of Papaver setigerum genomes assembly can be downloaed from NGDC under accession number GWHAZPH00000000 (2021) , the genome annotation can be downloaed from bed (2021)     gff3 (2021)     cds (2021)     protein (2021)

Papaver rhoeas

Genomic Raw Data: at National Genomics Data Center (NGDC)

Genome Assembly: GWHAZPI00000000.1

Genome Annotation: bed (2024, HiFi)     gff3 (2024, HiFi)     cds (2024, HiFi)     protein (2024, HiFi)

The 2021 version (published on Nature Communications) of Papaver rhoeas genomes assembly can be downloaed from NGDC under accession number GWHAZPI00000000 (2021) , the genome annotation can be downloaed from bed (2021)     gff3 (2021)     cds (2012)     protein (2021)

Papaver bracteatum

Genomic Raw Data: at National Genomics Data Center (NGDC)

Genome Assembly: GWHDRIO00000000

Genome Annotation: bed (2024, HiFi)     gff3 (2024, HiFi)     cds (2024, HiFi)     protein (2024, HiFi)

Support or Contact

If you have any questions, please contact with Dr. Xiaofei Yang, xfyang@xjtu.edu.cn, yangxiaofeihe@163.com

If you want to analyze these data, please contact Xiaofei Yang, xfyang@xjtu.edu.cn or Kai Ye, kaiye@xjtu.edu.cn

Citation

The 2024 version of Papaver somniferum , Papaver rhoeas , Papaver setigerum , Papaver bracteatum genome citation

Shenghan Gao, Yanyan Jia, Hongtao Guo, Tun Xu, Bo Wang, Stephen J. Bush, Shijie Wan, Yimeng Zhang, Xiaofei Yang, Kai Ye, The centromere landscapes of four karyotypically diverse Papaver species provide insights into chromosome evolution and speciation, Cell Genomics (2024), https://doi.org/10.1016/j.xgen.2024.100626

The 2021 version of Papaver somniferum , Papaver rhoeas , Papaver setigerum genome citation

Yang, X., Gao, S., Guo, L. et al. Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway. Nat Commun 12, 6030 (2021). https://doi.org/10.1038/s41467-021-26330-8

The 2018 version of Papaver somniferum genome citation

Guo L, Winzer T, Yang X, et al. The opium poppy genome and morphinan production[J]. Science, 2018, 362(6412): 343-347.